A descriptive title - Single-cell analysis repository

A short description of what this notebook is doing.

Library imports¶

from fancypackage import DATA_DIR, FIG_DIR
from fancypackage.io import read_zarr

General settings¶

SAVE_DATE = True
SAVE_FIGURES = False

Constants¶

DATASET_ID = ""
if SAVE_DATE:
    (DATA_DIR / DATASET_ID / "processed").mkdir(parents=True, exist_ok=True)
    (DATA_DIR / DATASET_ID / "results").mkdir(parents=True, exist_ok=True)

if SAVE_FIGURES:
    (FIG_DIR / DATASET_ID).mkdir(parents=True, exist_ok=True)

Function definitions¶

Data loading¶

adata = read_zarr(DATA_DIR / DATASET_ID / "adata.zarr.zip")
adata

Data preprocessing¶

More advanced data analysis¶